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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 408aa MW: 46416.9 Da PI: 7.9569 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.1 | 2.6e-19 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t+ kR++gilKKA+ELS+LCd+ + +++fs+tgk Lus10026613 10 KLENTNGRQATYGKRKHGILKKANELSILCDIPIILLMFSPTGK 53 6799**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.142 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.63E-22 | 2 | 81 | No hit | No description |
SuperFamily | SSF55455 | 9.03E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-16 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGRVKLKIKK LENTNGRQAT YGKRKHGILK KANELSILCD IPIILLMFSP TGKPSLCKGK 60 RSIEEVVTKF AQLTPQERTK RKLESLEALK KTFKKLDHDV NISEFFGSSS QTIEDLTNQA 120 NLLENQISET RKRLSYWTNA DEIHSVDHLE QLENSVRESL SRIQAHKEYL GKQQIVSLDC 180 NSQPCLQFQN EMQMPFRMNP EQQQFPPLQQ WLPNCDNQHF MLPDDPNLLP QRDIECSASS 240 SYGSYSGYYP TGKASDLSNS RQESAVSGIL NELHGNTSLR MQLPGQQYPQ YMPYNLNLLN 300 EVKFQPAPEM SLQEIPADFH LNGSFEVPKP GYCTTPGSWA STSGPCSVTM FDDQLFSQVH 360 PPLPVTKPST FTCYMKPLLT FKAMNRYYDM LHSGIALFYY FSSTVLR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576858.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 1e-102 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A067KYG7 | 0.0 | A0A067KYG7_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0008s08780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-91 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Lus10026613 |